Devolab Publications
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2004. Adaptive radiation from resource competition in digital organisms. Science (New York, N.Y.). 305(5680):84-6. Abstract
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2004. Avida: a software platform for research in computational evolutionary biology. Artificial Life. 10(2):191-229. Abstract
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2006. Balancing robustness and evolvability. PLoS Biology. 4(12):e428-e428.
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2007. Ecological specialization and adaptive decay in digital organisms. The American Naturalist. 169(1):E1-20-E1-20. Abstract
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2007. The effect of natural selection on the performance of maximum parsimony. BMC Evolutionary Biology. 7:94-94. Abstract
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2007. Effects of population size and mutation rate on the evolution of mutational robustness. Evolution; International Journal of Organic Evolution. 61(3):666-74. Abstract
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2000. Evolution of biological complexity. Proceedings of the National Academy of Sciences of the United States of America. 97(9):4463-8. Abstract
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2001. Evolution of digital organisms at high mutation rates leads to survival of the flattest. Nature. 412(6844):331-3. Abstract
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2003. The evolutionary origin of complex features. Nature. 423(6936):139-44. Abstract
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1999. Genome complexity, robustness and genetic interactions in digital organisms. Nature. 400(6745):661-4. Abstract
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2008. Harnessing Digital Evolution. IEEE Computer. 41:54-63.
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2008. Historical and contingent factors affect re-evolution of a complex feature lost during mass extinction in communities of digital organisms. Journal of Evolutionary Biology. 21(5):1335-57. Abstract
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2008. Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes. PLoS Computational Biology. 4(9):e1000187-e1000187. Abstract
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2008. On the gradual evolution of complexity and the sudden emergence of complex features. Artificial Life. 14(3):255-63. Abstract
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2003. Perspective: Evolution and detection of genetic robustness. Evolution; International Journal of Organic Evolution. 57(9):1959-72. Abstract
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2003. Selective pressures on genomes in molecular evolution. Journal of Theoretical Biology. 222(4):477-83. Abstract
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2006. Sexual reproduction reshapes the genetic architecture of digital organisms. Proceedings. Biological Sciences / The Royal Society. 273(1585):457-64. Abstract
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2004. Using Avida to test the effects of natural selection on phylogenetic reconstruction methods. Artificial Life. 10(2):157-66. Abstract
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2010. Social Structure and the Maintenance of Biodiversity. 12th International Conference on the Synthesis and Simulation of Living Systems (ALIFE). :461-468.
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2009. Applying Digital Evolution to the Design of Self-Adaptive Software. Proceedings of the IEEE Symposium on Artificial Life. :100-107.
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2008. Autonomic Software Development Methodology Based on Darwinian Evolution (poster summary). Proceedings of 5th International Conference on Autonomic Computing. :203-204. Abstract
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2009. Cockroaches, Drunkards, and Climbers: Modeling the Evolution of Simple Movement Strategies Using Digital Organisms. IEEE Symposium Species on Computational Intelligence. Download: wre_cdc_204-final.pdf (565.74 KB)
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2008. Cooperative Network Construction Using Digital Germlines. Proceedings of the Genetic and Evolutionary Computation Conference (GECCO).
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2009. Digital evolution of quorum sensing and its application. Online Proceedings of the Complex Systems Advanced Academic Workshop Spring Conference.
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2003. The Effect of Natural Selection on Phylogeny Reconstruction Algorithms. 2003 Genetic and Evolutionary Computation Conference. 2003:13-24.



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