Devolab Publications
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Chow, SS, Wilke CO, Ofria C, Lenski RE, Adami C.
2004. Adaptive radiation from resource competition in digital organisms. Science (New York, N.Y.). 305(5680):84-6. Abstract
Ofria, C, Wilke CO.
2004. Avida: a software platform for research in computational evolutionary biology. Artificial Life. 10(2):191-229. Abstract
Lenski, RE, Barrick JE, Ofria C.
2006. Balancing robustness and evolvability. PLoS Biology. 4(12):e428-e428.
Ostrowski, EA, Ofria C, Lenski RE.
2007. Ecological specialization and adaptive decay in digital organisms. The American Naturalist. 169(1):E1-20-E1-20. Abstract
Hang, D, Torng E, Ofria C, Schmidt TM.
2007. The effect of natural selection on the performance of maximum parsimony. BMC Evolutionary Biology. 7:94-94. Abstract
Elena, SF, Wilke CO, Ofria C, Lenski RE.
2007. Effects of population size and mutation rate on the evolution of mutational robustness. Evolution; International Journal of Organic Evolution. 61(3):666-74. Abstract
Adami, C, Ofria C, Collier TC.
2000. Evolution of biological complexity. Proceedings of the National Academy of Sciences of the United States of America. 97(9):4463-8. Abstract
Wilke, CO, Wang JL, Ofria C, Lenski RE, Adami C.
2001. Evolution of digital organisms at high mutation rates leads to survival of the flattest. Nature. 412(6844):331-3. Abstract
Lenski, RE, Ofria C, Pennock RT, Adami C.
2003. The evolutionary origin of complex features. Nature. 423(6936):139-44. Abstract
Lenski, RE, Ofria C, Collier TC, Adami C.
1999. Genome complexity, robustness and genetic interactions in digital organisms. Nature. 400(6745):661-4. Abstract
McKinley, P, Cheng B, Ofria C, Knoester D, Beckmann BE, Goldsby H.
2008. Harnessing Digital Evolution. IEEE Computer. 41:54-63.
Yedid, G, Ofria CA, Lenski RE.
2008. Historical and contingent factors affect re-evolution of a complex feature lost during mass extinction in communities of digital organisms. Journal of Evolutionary Biology. 21(5):1335-57. Abstract
Clune, J, Misevic D, Ofria C, Lenski RE, Elena SF, Sanju.
2008. Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes. PLoS Computational Biology. 4(9):e1000187-e1000187. Abstract
Ofria, C, Huang W, Torng E.
2008. On the gradual evolution of complexity and the sudden emergence of complex features. Artificial Life. 14(3):255-63. Abstract
de Visser, AJGM, Hermisson J, Wagner GP, Ancel Meyers L, Bagheri-Chaichian H, Blanchard JL, Chao L, Cheverud JM, Elena SF, Fontana W et al..
2003. Perspective: Evolution and detection of genetic robustness. Evolution; International Journal of Organic Evolution. 57(9):1959-72. Abstract
Ofria, C, Adami C, Collier TC.
2003. Selective pressures on genomes in molecular evolution. Journal of Theoretical Biology. 222(4):477-83. Abstract
Misevic, D, Ofria C, Lenski RE.
2006. Sexual reproduction reshapes the genetic architecture of digital organisms. Proceedings. Biological Sciences / The Royal Society. 273(1585):457-64. Abstract
Hagstrom, GI, Hang DH, Ofria C, Torng E.
2004. Using Avida to test the effects of natural selection on phylogenetic reconstruction methods. Artificial Life. 10(2):157-66. Abstract
Beckmann, BE, Grabowski LM, McKinley PK, Ofria C.
2009. Applying Digital Evolution to the Design of Self-Adaptive Software. Proceedings of the IEEE Symposium on Artificial Life. :100-107.
Beckmann, BE, Grabowski LM, McKinley PK, Ofria C.
2008. Autonomic Software Development Methodology Based on Darwinian Evolution (poster summary). Proceedings of 5th International Conference on Autonomic Computing. :203-204. Abstract
Elsberry, W, Grabowski L, Ofria C, Pennock R.
2009. Cockroaches, Drunkards, and Climbers: Modeling the Evolution of Simple Movement Strategies Using Digital Organisms. IEEE Symposium Species on Computational Intelligence. Download: wre_cdc_204-final.pdf (565.74 KB)
Knoester, DB, McKinley PK, Ofria C.
2008. Cooperative Network Construction Using Digital Germlines. Proceedings of the Genetic and Evolutionary Computation Conference (GECCO).
Beckmann, BE, McKinley PK.
2009. Digital evolution of quorum sensing and its application. Online Proceedings of the Complex Systems Advanced Academic Workshop Spring Conference.
Hang, DH, Ofria C, Schmidt TM, Torng E.
2003. The Effect of Natural Selection on Phylogeny Reconstruction Algorithms. 2003 Genetic and Evolutionary Computation Conference. 2003:13-24.
Beckmann, BE, McKinley PK, Knoester DB.
2009. Effects of Communication Impairments on Quorum Sensing. Proceedings of 3rd International Conference on Self-Adaptive and Self-Organizing Systems.
